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|Aerobic or anaerobic | Substrate | Microbial activity | Reaction noted | Some Examples |
aerobic | various amino acids in peptones | deamination* | alkaline (with pH indicator) | KIA (and probably most media) |
specific amino acid present in large amount | decarboxylation | alkaline (with pH indicator) | XLD Agar, MIO, Lysine Broth | |
anaerobic | one or more specific sugars | fermentation | acid (with pH indicator) | MacC. Agar, KIA, Lactose Broth, etc. |
thiosulfate | reduction with formation of H2S | black color (with Fe) | Modified MacC. Agar, KIA |
* All enterics (like most common chemoheterotrophs) will deaminate amino acids in peptones, yeast extract, and similar materials. (Deamination of specific amino acids may be tested for as in Phenyl-alanine Agar; see Period 4.
MacConkey Agar (modified) | Brilliant Green Agar 3 | XLD Agar 3 | |
selective agent(s) | bile salts, crystal violet, neutral red | brilliant green | sodium desoxycholate |
source of amino acids which may be deaminated 1 | peptone, proteose peptone | proteose peptone, yeast extract | yeast extract |
amino acid added for detection of decarboxylation 1 | none | none | lysine |
fermentable sugar(s) 2 | lactose (1%) | lactose (1%), sucrose (1%) | lactose (0.75%), sucrose (0.75%), xylose (0.375%) |
pH indicator |
neutral red: net acid = red, net alkaline = white |
phenol red: net acid = yellow net alkaline = red |
phenol red: net acid = yellow net alkaline = red |
source of H2S | sodium thiosulfate | none | sodium thiosulfate |
indicator of H2S production | ferric ammonium citrate | none | ferric ammonium citrate |
1 alkaline reactions.
2 acid reactions.
3 optional media; may be used in Exp. 14.
In the isolation of the enteric pathogens Salmonella and Shigella from food or clinical samples, one usually takes advantage of their gram-negativity (hence the media are selective against gram-positive bacteria) and the fact that they usually react negative for lactose and sucrose fermentation. Therefore, one tends to pick alkaline (non-acid-producing) colonies, ignoring the acid colonies which are produced by coliforms and certain other enterics.
Colonies of usual strains of Citrobacter (a commonly-occurring, non-pathogenic enteric) look identical to those of Salmonella on most isolation media. To assist in differentiating these organisms, XLD Agar is useful.
Shown below is a comparison of Salmonella to selected nonpathogenic enterics, showing the bases for the net pH reactions (and consequently the colony color) one may see on these media, the components of which were given in the preceding section. H2S production is not pH-related but its detection (with a black color) is a feature of many selective-differential media. (MMAC=Modified MacConkey Agar; BGA=Brilliant Green Agar; XLD=XLD Agar.)
biochemical process | typical Salmonella | typical Citrobacter | typical coliform | process applicable to | ||
Amino Acid Deam. |
+ (alk) |
+ (alk) |
+ (alk) |
X | X | X |
Lactose Ferm. | - | - |
+ (acid) |
X | X | X |
Sucrose Ferm. | - | - |
+ (acid) |
X | X | |
Xylose Ferm. |
+ (acid) |
+ (acid) |
+ (acid) |
X | ||
Lysine Decarbox. |
+ (alk) |
- |
+ or - |
X | ||
H2S Production | + | + | - | X | X |
appearance in | net reaction of typical Salmonella | net reaction of typical Citrobacter | net reaction of typical coliform |
MMAC | alkaline(white)+black | alkaline(white)+black | acidic (red or pink) |
BGA | alkaline (red) | alkaline (red) | acidic (yellow) |
XLD | alkaline (red)+black | acidic (yellow) | acidic (yellow) |
Kligler Iron Agar (KIA) | Lysine Iron Agar (LIA) 3 | |
source of amino acids which may be deaminated 1 | peptone, proteose peptone, beef extract, yeast extract | peptone, yeast extract, lysine |
amino acid added for detection of decarboxylation 1 | none | lysine |
fermentable sugar(s) 2 | lactose (1%), glucose (0.1%) | glucose (0.1%) |
pH indicator |
phenol red: net acid = yellow net alkaline = red |
brom-cresol purple: net acid = yellow net alkaline = purple |
source from which H2S may be produced | sodium thiosulfate | sodium thiosulfate |
indicator of H2S production | ferrous sulfate | ferric ammonium citrate |
1 alkaline reactions.
2 acid reactions.
3 optional medium; may be used in Exp. 14.
examples | Pseudomonas (a non-enteric) | Morganella Providencia Serratia Shigella | Citrobacter Proteus Salmonella | Escherichia Enterobacter Klebsiella | occasional strains (none for Exp. 14) |
glucose fermentation (acid rx.) | - | + | + | + | + |
lactose fermentation (acid rx.) | - | - | - | + | + |
H2S production (black color of FeS) | - | - | + | - | + |
deamination of amino acids (alkaline rx.) | + | + | + | + | + |
* A slight pink or peach color may be seen in the upper part of the slant. Also, much gas (not depicted in this figure) is usually present, indicated by gaps in the butt of the medium.
Principal Differentiating Tests |
Additional Differentiating Tests |
||||||||
Phenylalanine Deam. |
H2S Production |
Lactose Ferm. |
Motility |
Indole Prod. |
Methyl Red |
Simmons Citrate |
Lysine Decarbox. |
Ornithine Decarbox. |
|
Escherichia coli | - | - | + (w/gas) | + | + | + | - | + | + or - |
Enterobacter cloacae | - | - | + (w/gas) | + | - | - | + | - | + |
Enterobacter aerogenes | - | - | + (w/gas) | + | - | - | + | + | + |
Klebsiella pneumoniae | - | - | + (w/gas) | - | - |
- or ±3 |
+ | + | - |
Klebsiella oxytoca | - | - | + (w/gas) | - | + |
- or ±3 |
+ | + | - |
Typical Shigella 1 | - | - | - | - | + or - | + | - | - | + or - |
Typical Salmonella 1 | - | + | - | + | - | + | + | + | + |
Citrobacter freundii | - | + |
+2 or - |
+ | - | + | + | - | + or - |
Proteus vulgaris | + | + | - | + | + | + | - | - | - |
Proteus mirabilis | + | + | - | + | - | + | + or - | - | + |
Morganella morganii | + | - | - | + | + | + | - | - | + |
Providencia rettgeri | + | - | - | + | + | + | + | - | - |
1 Included on table for comparison only. (Enteric pathogens are not included in your unknown.)
2 Lactose fermentation should not be used to differentiate Citrobacter from other organisms. Many
strains of Citrobacter (including the one we generally use) ferment lactose weakly (just a trace of yellow in Lactose Fermentation Broth after 1 or 2 days); such organisms appear lactose-negative on MacConkey Agar and in Kligler Iron Agar.
3 ± = equivocal (orange) reaction in MR-VP Broth.